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Frederick Company Empowering Citizen Scientists to Do It Themselves in Chile

Posted by Jim H on August 5, 2011

Just passing along a great write up via LavaAmp partner Guido, who just moved to Chile to start work on a 6-month grant we won from StartUp Chile. Read the original article HERE. The rest speaks for itself……..

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Empowering Citizen Scientists to Do It Themselves

Posted by Justin Bourke 20pc on July 22, 2011 · Flag

DIY Bio Activists Seek to Improve Health in the Developing World

Chances are you’ve never heard of Chagas disease, unless of course you’re among the 40,000 people infected every year. It usually starts with a visit from The Kissing Bug, a blood-sucker named for it’s odd habit of “kissing” its hosts on the face during the night. The disease can be countered with antiparasitic treatments if caught early, but once it reaches the chronic phase the best you can do is delay or prevent its symptoms. These can include potentially fatal heart weakness or failure, malnourishment, or even dementia and motor impairment. There is no cure.

Diseases like Chagas are common and can have devastating effects in the developing world. There are a number of institutions that work to eliminate these and other health risks in the public interest – governments, inter-governmental agencies like the World Health Organization (WHO), and non-governmental organizations and charities. Many of their efforts have been successful and well known (thank you, WHO, for eradicating Small Pox), but their scale is limited by the amount of funding and political will they can muster. In an attempt to reach some of the more neglected areas of the world, some scientific progressives have begun advocating a less orthodox approach – do it yourself.

The DIY method, now a full-fledged underground movement, is based upon the belief that the average person can not only become equipped to solve their own challenges, but also contribute to the greater scientific community through open data sharing. This requires access to three things that most don’t have – proper equipment, training and opportunities for engagement. While there have been success stories in the States, providing these amenities in the developing world is a greater challenge. To find out whether or not DIYbio can help solve health issues abroad, several pioneers have begun the task of breaking down these barriers.

Equipment and Training

Guido Núñez-Mujica, co-developer of the LavaAmp, speaking at the 2010 BIL Conference in Long Beach, CA (source: http://www.flickr.com/photos/mg315/4356692014/)Any biologist will tell you that having the right equipment is essential to their work, but costs can be prohibitive in the developing world. According to Guido Núñez-Mujica, equipment that is already expensive in Western countries is even more so in developing communities due to high shipping and distribution costs. Núñez-Mujica intends to not only bring affordable equipment into remote areas, but make it easy to use as well. He is the co-developer of theLavaAmp, a handheld PCR device based on a concept originally proposed by Nitin Agrawal and colleagues at Texas A&M. PCR, an acronym for Polymerase Chain Reaction, is a method of copying DNA sequences. Until recently, the process required hefty machinery costing several thousands of dollars. Núñez-Mujica’s prototype, built by engineering firm Biodesic, will be no bigger than a cantaloupe, cost only $300-500 and be able to perform a DNA diagnostic in a matter of hours. That means if you get bitten by a Kissing Bug, you can find out if it was carrying Chagas on the spot. In fact, Núñez-Mujica was recently in Venezuela helping people do just that. He hopes that a teenager or hobbyist will be able to use the LavaAmp for everything from diagnosing Chagas to studying crop famine. “Rather than wait for solutions to come to them, [these communities] must be able to take steps themselves, even if those steps seem small.”

Nina Dudnik, meanwhile, seeks to not only bring affordable equipment to developing countries, but also provide much needed training. The difference is that her focus is on universities. Dudnik is the founder of the non-profit Seeding Labs, which collects unused equipment from labs in America and sends it to universities in Africa, Latin America and Asia at affordable prices. They also provide training both abroad and through intensive fellowship programs here in the States. According to Dudnik, their equipment has already been used by thousands of students and has directly lead to over 125 new publications, two new patents and a tool for diagnosing multi-drug resistant tuberculosis – a disease impacting one-third of the world population and an even greater percentage in poor communities.

Engagement

A guide to how the MudWatt works. This cute device has been engaging primary school kids around the country. (Courtesy of Keegan Cooke)Having affordable equipment and training is essential, but it doesn’t guarantee engagement. Few in their lifetimes are able to get hands-onexperience with the wonders of science, and even fewer get the chance to create real results. This is where companies likeKeegoTech come in. Their business is built on a microbial fuel cell (MFC) known as the MudWatt. In simple language, it’s a battery that runs on dirt. The technology is still too young to create enough power for practical use, so instead they sell the MudWatt to schools  as an educational tool to engage children in science. In doing so, they have discovered that scientific advancement can come from anyone. Says their co-founder, Keegan Cooke, “MFC technology has the potential to become a cheap and reliable way of charging small electronics, but we’re not quite there yet.  Scientists don’t yet know the best arrangements of electrode material or organic components to create enough power. So we invite students to experiment with our kit and post their findings on our community site. This has led to some very interesting ideas we never would have thought of.” Cooke’s favorite example is an eighth grader in California named Ricky, who alongside his father was able to double the output of the MudWatt from dirt in a local riverbed – a sample that KeegoTech is now working to analyze. But while they see this approach working in the developing world, their ability to successfully focus their efforts there is still uncertain.

The Future of DIY BioOrganizations like LavaAmp, Seeding Labs and KeegoTech have begun to demonstrate what can be done when we make it possible for the average person to engage in science. And they are already getting investors. Seeding Labs’ fellowship program in the U.S. is underwritten by Novartis. LavaAmp was recently awarded a $40,000 grant from Start-Up Chile, a program run by the Chilean Ministry of Economy. But the movement is young and unproven, and the likelihood of continued funding remains unsure.

Still Joseph Jackson, one of the premier authorities on citizen science, is undeterred. A key partner in bringing Núñez-Mujica’s LavaAmp to life, he sees potential for the DIY movement to take off in the developing world. “These countries generally have fewer restrictions compared to the U.S., and enough demand for solutions. If we can get past the infrastructure barriers, some of them could become ideal breeding grounds for open innovation.”

Posted in Awards and recognition, Blogterviews, LavaAmp, News, Scifoo | 1 Comment »

Biotech Connect

Posted by Jim H on July 21, 2011

The Dog Days of Summer are here and the Biotech Livin’ in Frederick is easy……

I’m setting up a couple of events you all may be interested in.  First and foremost, working on the next BioBeers in August at “The Incubator” aka the Frederick Innovative Technology Center or FITCI for short.  I have one firm sponsor and could use one or two more, if you are interested.  No date, at his point in time.

Just got out of a great meeting at the Frederick County Chamber of Commerce with Frank and SAIC-Frederick.  We’re setting up, with Frank’s help, the next Tech Connect for Bio event at the Chamber.   What we are trying to do is to peel the onion back a bit deeper and give local companies more insight into what is going on at Fort Detrcik and how they can participate as either a partner in providing goods and services or in licencing out technologies developed on the Fort for commercial purposes.   This is the main reason Jim Hartley and I started BioBeers in the first place.  Jim is working with our old (I say that with the best intent) friend Deb on this amazing system they have developed:

You need to scroll over to the right hand column and pick the “SAIC-Frederick Targeted Protein Delivery” icon to see their video.  I don’t know how to copy and attach a flash file.  As you’ll see from the viseo, they even roped in another former LifeTech employee, Dave Hoekzema, to lead the commercialization effort.  It’s like the holy trinity of innovation that the fools formerly in charge of  Invitrogen jettisoned.

The third thing is an event I am helping to set up.  Lilypons Water Gardens has an annual wine festival and Dog Jumping contest.  You know those events you may have seen on ESPN where the dog sprints down a dock and leaps as far as they can into the water chasing a decoy?   So I was there in my official capacity as a  Chamber of Commerce Ambassador talking to Margret about trying to find out if they could use spent grains from beer making as fish food and she mentions their annual event, The Puppy Palooza on Sept 3rd & 4th.  Margret mentioned that the crowd was more of a “beer crowd” than a wine crowd and if I knew anyone she could talk to about making this a Beerfest?  In case you didn’t know, we have a local brewery call “Flying Dog.”  I know some people there and we’re going to make it happen.  The 1st ever Flying Dog competition at Lilypons sponsored by Flying Dog and hopefully represented by all of the local breweries.  Stay tuned!

Posted in BioBeer, Blogterviews, Events, Government Funded research, Rants | 1 Comment »

April 8th Biobeers and SAIC-Frederick NCI tour today

Posted by Jim H on April 12, 2011

Biobeers on Friday rocked the Akonni house.  We had about 200 people and killed 3 kegs in just about 3 hours, a new Biobeers record (although some people have nothing to be proud about).  Let’s hope we can break that record in June.  I have several people offering to sponsor in June, but we need a venue.  If anyone has space for 200 people and the desire to have 200 people in biotech roost in their hood foe a few hours in June, let me know…

I uploaded some pictures sent to me by Cheryl at Akonni onto MeetUp.  If you have any you’d like to share, please let me know.

And speaking of FredCoBio stuff, I was invited by my friends at SAIC-Frederick to be a part of a “Media Tour” of NCI-Frederick.  the tour included a nice overview, a tour of the Laboratory of Proteomics and Analytical Technology (LPAT), the NCI Alliance for Nanotechnology in Cancer and the Electron Microscope Lab.  It was a good tour, fairly basic on the hard core science side of things, but a good tour nonetheless.

I learned a couple things:

1.  US consumers spent about $5.1 billion USD on Halloween in 2010.  The entire budget for NCI annually is $5.2 billion.  That means we spent about as much on pagan rituals and high fructose corn syrup products (excluding motor fuel)  in 2010 as we did on cancer research.

2.  The Federal Government spent in 30 days in the was in Iraq as much as they have in the past 30 years on cancer research (per the NCI budget).

OK, which one is has the best ROI?  The War on Cancer or the War on Terrorism?

Posted in BioBeer, Blogterviews, Events, Government Funded research, LavaAmp, presentations | Leave a Comment »

Morel Season is Almost Here

Posted by Jim H on March 9, 2011

In yet another bout of shameless self promotion, I was written up (that used to be a bad thing when we were in college) in the most recent Elegant Living magazine for Morel Hunting.  If you have any questions or would like to accompany me on a hunt, let me know

Elegant Living – Spring 2011

Posted in Blogterviews | Leave a Comment »

Slow day in the news

Posted by Jim H on July 8, 2010

Seems like I’ve started every recent post out with an apology for not being more diligent in maintaining this site.  A slow day on my contract work at MedImmune gives me the chance to push some of my hidden agenda forward.

I missed out on an opportunity a couple weeks ago to tell all about Kempbio taking the Best New Incubator Company award.  I share common lab space with Chris and Kempbio, so I am well aware of how good business has been for them.  There was a good feature article in the Gazette and in

Tom Fedor/The Gazette

the Baltimore Citybizlist.

There’s even a mention in “la Tribune” about a recent licensing deal Kempbio made for a transfection reagent:

Polyplus Transfection cède un contrat de licence

La biotech spécialisée dans les vecteurs chimiques de transfert de gènes accorde l’utilisation de son savoir-faire à l’américain Kempbio, basé à Frederick (Maryland). Ce contrat participera à la hausse de 20 % du chiffre d’affaires (2,6 millions d’euros) prévue chez Polyplus en 2010. La start-up strasbourgeoise (27 salariés), qui a réalisé trois levées de fonds depuis 2002, continue d’investir l’essentiel de ses ressources en R&D.

On my home front, things are really starting to take off with the LavaAmp project.  Rob Carlson, one of the shareholders with Biodesic LLC, is in DC this week for Meeting of the Presidential Commission for the Study of Bioethical Issues he mentions on his blog Synthesis.  He just published a book through Harvard Press called Biology is Technology that’s getting us quite a lot of attention.  I just got my copy last week and haven’t read it, yet.  The reviews are pretty impressive, overall.

Meanwhile, Joseph Jackson, the CEO of LavaAmp, is organizing the Open Science Summit in Berkeley July 29th-31st.  He also had a nice feature article published in Xconomy (San Francisco) called “The Open Science Shift“.

While were on the topic, Guido (the other shareholder) is off in Colorado going through training at the Unreasonable Institute.  I can’t embed the flash in WordPress, but you can watch his pitch HERE. In a couple weeks, he’ll be off the Oxford to give his TEDTalk, as he was made a TEDGlobal Fellow.

Through all of this, I just arrange the BioBeers events.  Speaking of which, I hope to have the next one at the new Riverside Research Park in August (date to be determined).  That video on their home screen is awe inspiring.  I wish it was embedable.  maybe I’ll try to grab a copy.  I hope to get in there to get more information about the NCI’s Advanced Technology Partnerships Initiative (ATPI). Here’s a link to the PDF describing the program.  It’s up to you, Biotech companies in Frederick, to win some of these contracts!  Stay tuned….

Posted in Awards and recognition, BioBeer, Blogterviews, Business, Events, Expansion, LavaAmp, News, Public/Private Companies | 1 Comment »

In the News

Posted by Jim H on October 24, 2009

I didn’t want to scoop this story too early, but FredCoBio, and BioBeers specifically, will be featured on Jason Balog’s Biotech blog in the News-Post tomorrow. Stay tuned for the post.

I wanted to post some neat slides being shown in the Lunchroom at MedImmune for the Open House they had last weekend, but alas the slides are not for public consumption.

A couple interesting facts about the new MedImmune Frederick Manufacturing Facility: over 355,000 sq ft under roof.  It is the tallest building in Frederick at 6 stories.  The facility will make Synagis and is being built with the capacity to make other products, potentially FluMist.

Posted in BioBeer, Blogterviews, Expansion, Vaccines | Leave a Comment »

Next BioBeers, Thursday 9/24

Posted by Jim H on September 8, 2009

It’s been a busy couple of months and I apologize for not posting more frequently, but have to catch everyone up on a few things.

First, if you tired of reading this blog, you may want to check our Dr Robert House’s (one of the 25 CEO’s you need to know in 2009) blog over at DynPort vaccine:  Drugs and Bugs An interesting quote in the most recent post talking about vaccine safety:  ”Vaccines are literally the only class of pharmaceutical (using the broadest sense of the term) that is routinely administered to large numbers of healthy individuals”.  I hope we can entice Dr House to attend BioBeers this month.

Oh, and speaking of BioBeers, I created a new LinkedIn group for those not young, hip and computer savvy enough to join the GoogleGroup.  The next BioBeers is Thursday Sept 24th at the Flying Dog Brewery. Our gracious hosts at the Flying Dogs have again agreed to put up with us, even though they have the GonzoFest this weekend.

The response lately to the BioBeers event has been overwhelming!  All kinds of offers to sponsor this and that.  I wish I could get a few more people willing to present their research.  For this event, we’re going to try having the presentations in the conference room adjoining the pub.  This way, the people who would like to hear the presentations can enjoy them in a more intimate setting (probably fit 30-40 people in the conference room).

As in the past, please RSVP to me directly, or by leaving a comment on this post, or via twitter, Tweetvite, LinkedIn group or the GoogleGroup.

I should be able to update everyone on who is sponsoring and speaking, soon.  In the mean time, this video from SciFoo 2009 was published by Nature over the weekend.  One of the stars of the show is my friend and DIYbio colleague and evangelist, Mac Cowell.  Brought back many memories for me from SciFoo ’08

Posted in BioBeer, Blogterviews, Events, Nature, Scifoo | 1 Comment »

FredCoBio and the Immaculate Confection

Posted by Jim H on August 10, 2009

This may be a bit of a stretch to link Mary Spiro’s piece, “Gummi guts: artist Jason Freeny bestows rubbery confection with internal organs“ in the Baltimore Examiner with FredCoBio, but here’s the catch:  The artist is from Middletown and it’s biotech, geeky stuff.  Also, really cool stuff.

Immaculate Confection by Jason Freeney via Baltimore Examiner

"Immaculate Confection" by Jason Freeney via Baltimore Examiner

There are a number of cool images on Jason’s web site MoistProuctions, and a neat slide show on Mary’s Baltimore Examiner piece as well as an interview.  Although he’s in Manhattan now, you can find more of the former FredCo resident on his blog and his Facebook Page:  Gummi Fetus.

All this talk almost makes me want to comment on the recent banter spewed forth by the RTLifer’s about one of our largest Biotech companies, but instead I’ll ask you to enjoy this YouTube video of a Gummi Bear (fetus)being destroyed for the sake of science (via joannelovesscience.com)

By the way, you trolls, if you’re so committed to your mission, why not take a pledge to never use a single product that was developed using Stem Cells?  Same thing to those trolls destroying Pharma Execs (and at one point in time threatening me and my family) claiming to be Aminal Rights Activists:  Don’t use any drugs or products that used Aminaml Testing?  Why not?  It would be the right things to do.

On another note, I saw an interesting article in the FNP yesterday that Emergent Biosolutions is pulling out of Frederick.  This caught me by surprise because I didn’t even know they were in Frederick.  According to their Press Room, they’ve owned these buildings since 2004, but never renovated or improved them.  Building in Gaithersburg instead.  OK, you win some and you lose some.  I thought I heard somewhere that they won a contract fo9r H1N1 vaccine, but I may be mistaken.

I somehow missed Balog’s Biotech “Battle over biosimilars” last Sunday in the FNP.  Personally, I think giving the “biosimilars” more protection, mimimizing the competition will have the opposite effect of putting new products on the shelf faster.  It will stop competition dead in it’s tracks at the expense of the people needing these new therapies and ultimately, more people will die.  The US Patent System is broken and archane and needs to be overhauled thrown out the window.

I would also be remiss if I didn’t mention a write up in FNP last week about MedImmune.  The new facility is on schedule to open in 2011.  I also learned, informally, that Synagis will be the first product produced there, but the plans are to move to more “flexible” manufacturing to permit other uses in the future.

Phot by Sam Yu via Frederick News Post

Phot by Sam Yu via Frederick News Post

I will be making a guest appearance at the Frederick County Workforce Service’s Center at noon on Wednesday 8/12 for a “Lunch-n-Learn”.  If you’re looking for work, then I might suggest you attend.  You may not “learn” anything, but it’s all about the networking.  I know I have been through the Center more than once in the past 9 years.  I think it’s the least I can do to return the favor.

And speaking of networking, I am working on the next BioBeers with a target date of Thursday 8/27.   Pencil it in.  We can discuss fetal Gummi bear stem cell research…

Posted in BioBeer, bizzare, Blogterviews, Business, Events, Expansion, Funny, News, Rants, Vaccines | Leave a Comment »

Is Science where IT was 25 years ago?

Posted by Jim H on July 7, 2009

In case you haven’t noticed, my blogging has lately been dragged into the blackhole that has become the Twitterverse.  I spend so much time tweeting and reading interesting articles posted by my followers and friends and scouring my Google Reader RSS feeds to spew forth things I find interesting to the twitterverse.  I am neglecting FredCoBio.

My apologies.

I do promise to be more engaged this week.  I am leaving in the early afternoon tomorow for Palo Alto, CA to attend SciBarCamp.  Silicon Valley, the land of Google and Yahoo.  A Stranger in a Strange Land, me a Biotech guy in The Garden of Eden of IT.

I was just thinking about the way things were 25 years ago in 1984.  The Orwellian era, the first 4 years of Reganonimics.  Man, things were interesting back then.

After graduating a term early from Wittenberg in 84, we moved back between Rochester and Cleveland for a few months looking for work.  Finally, I landed a job selling windows in Rochester which lasted for about 3 months.  The windows were “made” by US Steel.  One of the lines in the canned pitch I spewed was that “if US Steel goes under , we’re all in trouble.”   I quit because I couldn’t stand bilking people for more money in windows than their house was worth, even without windows.  Then I got a contract job at Xerox, another local company in a new concept called “telemarketing”.

I was there about 18 months, from ’84 until ’85.  I was selling photocopiers (when you work at Xerox, you learn not to call them Xerox machines), Xerox Memroywriter Typewriters ( a daisy wheel typewriter/printer with a limited 10-40K of memory ) and this nebulous thing called an “ethernet”.  The idea of an ethernet was invented by Joseph Wilson for a “paperless office” some time in the mid 1960′s.  Our training was primarily composed of watching 16mm movies (probably Kodak film, which had entered the xerography business by his point in time) made by Joseph Wilson explaining how this “ethernet” would revolutionize the modern American office place.  In retrospect, it was fascinating.  At the time, for a 20-something more interested in what soccer match or practice was coming up that afternoon than actual work, it was like “meh”.    I could push more photocopiers and Memorywriter memory upgrades (after using it, most people did realize how much time it really saved to hit the F1 button to type the return address on an evnvelope than to key every stroke) without having to deal with trying to explain how a “paperless office” would make their life simple.  I made good money for the 80′s, but was still selling more than an entire sales branch of 5-6 field reps and only making 1/2 what one field guy would make.  Selling an ethernet installation over the phone was an entirely different issue.  That got under my skin, so I quit and decided to get back to my college training in Biology and Chemistry.

Before I left Xerox, I witnessed the most remarkable thing: a “facimile” transmission (perhaps the first in North America, The Japanese were rumored to have done this already) between Xerox Palo Alto and our building, building 813 on Henrietta Rd.   A single page of typed text took probably 45 minutes to transmit, but think of how much better that was than via US Postal Service back in 1984?

And so, as I prepare to leave my family alone for nearly a week,  I can’t help but to think of the irony of returning to Palo Alto.  I had this moment of transcendental thought perhaps linking those events of 25 years ago with today.  I hope to engage intelligent (mostly 20 something) people in conversations about how we need to be able to explain in common terms how the medical breakthroughs we have been working on for the past  25 years are analogous to the situation of  ”IT” ( a term surely not yet invented in ’85) and the state opf science today.  So much ignorance and denial of the potential benefits.  So much misunderstanding of the basics of the art.  And how quickly the art of IT advanced and how bio science is in the same state today.  That people could actually question the nature of life as evolving and dynamic, not fabricated by one of many Gods. That our collective knowledge of biological sciences is still so preliminary because the “hardware” doesn’t exist to exploit it fully.  Geesh, it freaks me out.

So I am going to Palo Alto in the AM, leaving FredCoBio.  As may late, great friend Ian Clarkson used to say (who’s father ained considerable noteriety as a UK trained toxicologist at the U of R who discovereded that methylmercury hydroxide, a by-product of some type of fungal infection of grain silos in Baghdad, was responsible for killing 10′s of thousands of people in the 70′s):  If you’re going to trip, you might as well travel.

And what a Long Strange Trip it’s been.

Posted in BioBarCamp, Blogterviews, General, Rants, Scifoo | Leave a Comment »

Of Morels and Men

Posted by Jim H on May 7, 2009

My interview with the FNP was published yesterday. Published in the “Food” section, no less.  The print edition has  a lot more pictures of my beautiful collection.  Just this goofy picture of me in the on-line version.

Posted in Awards and recognition, Blogterviews, Nature, News | 1 Comment »

 
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