Frederick County Biotech Community

Everything Biotech in Frederick County, Maryland

Archive for the 'General' Category


Life Extention for 20 bucks

Posted by Jim H on March 7, 2008

Taking a tip from Attila at PIMM, I am going to blog briefly again about SENS and the concept of Life Extension. If old age still accounts for 2/3 of all human deaths, why is there not a focused effort to combat it? And according to other studies, improving peoples health will actually increase long term health care costs so why aren’t the big Pharma and insurance companies all over it? In concept, we need to start thinking about aging as a disease.

Personally, I have been obsessed with the concept since reading Robert Heinlein’s “Time Enough For Love” in 1979 or 1980 (kind of fuzzy on the exact date for some reason). It is a story about a man who is thousands of years old and stays alive through a series of regenerative medical procedures and good genetics.

At a recent AFCEA luncheon (I wish they’d fix their damn web site and start leaving a trail of speakers and presentations!), I posed a question to one of the Directors of NCI (don’t recall his name) about how long he thought human life could be extended. His answer was that he thought that human life expectancy has already increased dramatically in only the last generation. 100 years ago, life expectancy was somewhere in the 60’s (in the US, that is) and today it is over 70. He fully expects that number to continue to grow and said he wouldn’t be surprised if someone born in the next 30-50 years (maybe one of my great grand kids?) would be able to live to 150 or 200 years old.

That should be enough to earn $20 for blogging about Longevity Research, eh?

Posted in Awards and recognition, General, Rants | 1 Comment »

Science Blogs

Posted by Jim H on January 27, 2008

I do a lot of surfing, in my sare time, looking for stuff to write about, commenting on some of my favorite blogs and just reading other blogs for fun. I have “blogrolled” some of the blogs I read regularly in the column on the left. I will be addin gto it in the future.

If you’re a rookie, then the ScienceBlogs™ is a good place to start. This weekend I have been going through the list published on A Blog Around the Clock for the winners of the 2007

The Lab Fridge

Category: In the Lab
Posted on: May 10, 2007 10:00 AM, by RPM

Nothing captures life in the academic sciences quite like Piled Higher and Deeper. In yesterday’s comic, Jorge Cham shows us the disgusting innards of the lab/office fridge. Now, Jorge is a physicist engineer, so his fridge is the one where you’re supposed to store your food and drinks. When a biologist thinks of a lab fridge, he pictures something quite different. With that in mind, here’s my rendition of “The Lab Fridge”:

lab_fridge.gif

Aside from the empty bottles that some lazy, inconsiderate lab mate (most likely me) failed to refill, what’s missing from the fridge?

Here’s the whole list, for your reading pleasure:

The Poem:

Digital Cuttlefish

Much Ado About…The Brain?

The Comic:

Evolgen

The Lab Fridge

Essays:

10000 Birds

In Memory of Martha

Star Stryder

You are the Center of the Universe (and so am I, and so is Gursplex on Alpha Eck)

The Panda’s Thumb

Stuck on you, biological Velcro and the evolution of adaptive immunity and Behe vs Sea Squirts, fused into a single article.

Bad Astronomy

Happy New Year Arbitrary Orbital Marker!

Aetiology

Would you give your baby someone else’s breast milk?

Anterior Commissure

Why we bond - Individual recognition, evolution, and brain size

Retrospectacle: A Neuroscience Blog

How Much LSD Does It Take to Kill an Elephant

Archy

Visiting the Wenas mammoth and Looking for drowned mammoths fused into a single essay.

Backreaction

Science And Democracy III

The Questionable Authority

Adam, Eve, and why they never got married

Bit-player

Measure twice, average once

Bootstrap Analysis

Shrew party

Cocktail Party Physics

Genie in a Bottle

Evolving Thoughts

Ancestors

Coffee Talk

What is the meaning of (grad student) life?

A Blog Around The Clock

The Scientific Paper: past, present and probable future

Aardvarchaeology

Your Folks, My Folks in Prehistory

Creek Running North

Breathing in, breathing out

Thoughts from Kansas

Neither means, motive nor opportunity: a guide to dysteleology

Deanne Taylor’s blog

Faculty diversity in science

Deep-Sea News

Our Ocean Future: The Glass Half Empty and Our Ocean Future: The Glass Half Full fused into a single article.

Depth-First

SMILES and Aromaticity: Broken?

Duas Quartunciae

The Evolution of Wings

Effect Measure

Tamiflu resistance: digging beneath the headlines

The End Of The Pier Show

No Girrafes On Unicycles Beyond This Point

The Loom

Build Me A Tapeworm

The Pump Handle

Popcorn Lung Coming to Your Kitchen? The FDA Doesn’t Want to Know

Denialism blog

The Road to Sildenafil - A history of artifical erections

The Other 95%

Anemones Raise a Tentacle in Support of Evolution

Highly Allochthonous

Testability in Earth Science

Invasive Species Weblog

Square Pegs

Laelaps

Homo sapiens: What We Think About Who We Are (Redux)

Life of a Lab Rat

Riding with the King (also found here)

Living the Scientific Life

Schemochromes: The Physics of Structural Plumage Colors

The Primate Diaries

The Sacrifice of Admetus

Afarensis

The First Fossil Hunters: Paleontology in Greek and Roman Times

All of My Faults Are Stress Related

The Sound of Mylonites

Microecos

In the eyes of the Aye-ayes

Mind the Gap

In which I leap into the Void, In which I lift my finger from the ‘pause’ button, In which I contemplate the road taken, not taken, then re-taken and In which I rejoice in muscle memory fused into a single essay.

Omni Brain

How moving your eyes in a specific way can help you solve a problem

Minor Revisions

Indefensible

Neurologica

Sloppy Thinking about Homeopathy from The Guardian

Neurophilosophy

An illustrated history of trepanation

Notes from Ukraine

The Chernobyl liquidators: incredible men with incredible stories (Part 1), (Part 2), (Part 3) and Musings about the liquidators fused into a single article.

Pharyngula

Segmentation genes evolved undesigned

Pondering Pikaia

Moving Mountains

Quintessence of Dust

They selected teosinte…and got corn. Excellent!

Adventures in Ethics and Science

Getting ethics to catch on with scientists

Schneier on Security

Cyberwar

Shtetl-Optimized

Shor, I’ll Do It

Stranger Fruit

Pithecophobes of the World, Unite! Part I, Part II, Part III and Part IV all four fused into a single article.

Posted in Awards and recognition, General, Rants | No Comments »

Next BioBeer: Monday Feb. 4th

Posted by Jim H on January 25, 2008

It is time for BioBeer again. It looks like we’re going to do it on Monday, Feb 4th from 5 until 7 PM. I will send an e-mail to everyone on the list, so if you don’t get an e-mail and would like to join us, just leave a comment or fire me an e-mail.

Been busy as ever this week and haven’t had a chance to post anything, not that there hasn’t been a lot of news like this and this and this. That InvenioIP search engine is neat. You should check it out.

I am working on a couple posts that are requiring actual research. More to come, I promise.

By the the way, the Venue will be Barley & Hops again this time. I have been in contact with people at Flying Dog Brewery. As soon as I can get 20 or 30 people, we can have a private tour, with 16 beers on tap. And I have been told by friends at PerkinElmer that they will “sponsor” the event if we go. We can discuss this at B&H Monday, Feb 4th.

Be there or be square!

Posted in General, News, Rants | No Comments »

Banks, Biotechs and Buyouts

Posted by Jim H on January 14, 2008

I must’ve missed posting this nice article in the 12/27 edition of The Gazette. This is a nice summary of some of the things I have been talking about, and some other newsworthy stories to boot.

I have a busy week ahead, but I will be organizing the next BioBeers event soon.  Based on feedback, it seems that most people don’t visit the blog enough (I am getting only about 80 hits per day on weekdays and fewer on weekends) and would prefer to be invited by e-mail.

Everyone interested should check out the BioBeers Midwest web site, if you haven’t found it through the comments section, and also the Colorado Life Science Deal Flow site.  If we can move to this level of the blogosphere, I will be happy.

I also ran into a number of new blogroll sites through My Biotech Life I need to add.  Some really neat stuff going on that I will try to link for all of those not savy enough to surf to themselves.

Posted in Business, General, News | 1 Comment »

BioBeers Reminder

Posted by Jim H on January 4, 2008

Since it’s Friday, I thought I would remind everyone to clear their calendars for the first FredCo BioBeers Chapter meeting on Monday 1/7 at Barley & Hops.   Monday is Happy Hour all day at the Hops, so $2.00 beer.

You have all heard my rants about how fermentation is a biological process, so come out and support a local Biotech venture, network, or just sit back in the corner and observe like the introverted science geek we all know you are.

I will wear my “Clone checker” cap, if you don’t know me already, so you can recognize me and to add to my personal sense of science geekiness.

Posted in Events, General, Rants | 5 Comments »

The Year in Review

Posted by Jim H on December 30, 2007

I like to read and watch those “Year in Review” features rampant in the media at this time of the year.  there was one run in the Gazette that I found particularly poignant, with frequent mention of Fred Co Biotech companies, and Chesapeake Green Fuels also featured in This Month’s Frederick Magazine (sorry, not available on-line).

Rather tha cut and paste, I’ll let you follow the links

The Gazette:  Banks, Biotechs and Buyouts

and this one about some of the big moves in Biotech (which is primarily about Mo. Co.) Buyouts marked Biotech Sector in 2007 

Posted in General, News | No Comments »

BioBeers Fred. Co. Chapter

Posted by Jim H on December 27, 2007

I came across an organization through My Biotech Life out of Colorado called BioBeers. In the holiday spirit, I think this is a great idea, so I am thinking about starting an East Coast Chapter.

According to their Blog site, BioBeers is all about networking with other Biotech people in the area, even for presenting research, establishing collaborations, having a good microbrew. So now that Flying Dog is a Frederick County “biotech” company, why not have something similar here?

First meeting will be at Barley & Hops, Monday January 7th starting around 4 PM. Be there or be square!

Posted in General, Rants | No Comments »

A Day in the Life of Gahaga Biosciences

Posted by Jim H on December 20, 2007

As I have mentioned before, I would like to do more with this blog than merely finding news worthy mentions of Biotechnology in the county through swiping material from the Frederick News-Post, Gazette, Washington-Post etc. So I was thinking the other day that I would like to start “blogterviewing” everyone I can on my list of Companies and non-profit/government sponsored research. I’ll start with myself, mostly because this is easy and I can just swipe my own blogterview from Attila at PIMM

.

The busy life of a stem cell (biotech) startup founder (click here to go to the PIMM blog archive)

Posted by attilachordash on October 15, 2007 (note: I have edited the original bloterview for some minor content and hyper links)

If you ever thought of launching a biotech startup… the following blogterview is for you. Jim Hardy is a long time insightful commenter of PIMM and he shared with me his brand new experience as the founder of a biotech startup in the much hyped field of regenerative medicine. The transparency of the interview makes it really valuable besides its information richness thanks to Jim. I found especially useful the used equipment network by necessity, which could be the base of a worldwide biotech startup network and could serve a bioDIY movement. Make no mistake: biotech is the next IT.

ACs: Would you be kind enough to introduce your background?

JH: My name is Jim Hardy and I have a BA in Biology and Chemistry from Wittenberg University, a small Liberal Arts school in Ohio. I sold Xerox office equipment for a couple years after school before getting back into science. I was large-scale chemical mixer making laundry detergents, a lab tech at the University of Rochester for 3 years and dabbled in graduate classes before moving to Maryland in 1988 to work in R&D at Life Technologies, which is now Invitrogen (a subject for a separate post). I have always found R&D rather boring and would rather finish one project and move on to the next, so the rest of my career has been in Manufacturing.

ACs: What is the story of Gahaga BioSciences?

JH: Gahaga is an acronym for the three founders: Garner-Hardy-Gage. That’s always the first question. We started the company to commercialize a proprietary method for extracting 3-5 times the number of implantable HSC from afterbirth than is achievable from traditional Cord Blood recovery procedures. Our current business has drifted away from the initial goal. I found your blog, because I was googling amniotic stem cells, or something of that nature. The initial process I am using for producing MSC’s is almost precisely as you describe in the “Make Stem Cells at Home” post and in your poster. Dissect amnion, digest, plate or freeze. So, by classification, my cells would be Amniotic Membrane-human Mesenchymal Stromal Cells (AM-hMSCs).

I just learned our cells stain intensely positive for Nestin (a neural stem cell marker), by Cellomics Array scan and CD 44+ (hematopoietic stem cell marker) by FACS. Right now I am just looking to get these cells into as many places as possible to learn what exactly they are.

Gahaga Biosciences is a client company of the Frederick Innovative Technology Center (FITCI), a business incubator program in Frederick, Maryland. Anyway, I’ve just started a local blog called Frederick County Biotech Community.

ACs: What are your working on at this very moment?

JH: I have three separate groups working with me now:

Last week, I dropped some cells off at Dr. Bressler’s lab at Johns Hopkins. They will use them for toxicity work and also to teach a class at the NIH on how to use stem cells (in exchange for free publicity).

I am also working with Dr. Farrar in the Cancer Stem Cell group at NCI here in Frederick. They’re phenotyping the cell line as well as looking at gene expression during differentiation. They have specific of targets they’re most interested in, of course , so I still have some phenotyping to do.

Then I have Dr. Kelleher-Anderson at Neuronascent running Cellomics Array scans . She’s a neuronal stem cell junkie and wanted to look for precursors and hopefully take some pretty pictures for me.

And this week I was talking with an old colleague from Life Tech days. This person invented Lipofectin and commercialized the cationic lipids for the first time back in the late 80’s early 90’s. He has started another new company, tinkering around with novel transfection reagents and wants to use stem cells. Maybe that’ll be the fourth collaboration, although that collaboration would be entirely commercial.

I will know in a few weeks time whether or not I have “stemness” factually instead of just looking like they are supposed to. That would give me something saleable that I could market to researchers. The business model for Gahaga is to make the research tools for the researchers so they don’t have to spend all of their time making things they need to accomplish their research. Kind of like like the hardware store in a gold mining town.

ACs: Where does the funding come from?

JH: I am self funded. I have enough to sustain myself for 20-30 months, in terms of paying the bills, sending kids to college and buying materials. I am funding my “research” by sourcing and processing tissue for a couple of small start ups. Making foreskin feeder layers, cord blood serum for culturing, HUVEC (Human Umbilical Vein Endothelial Cells, soon to be MSC from Wharton’s jelly, too) and just working up a human placental BME (basement membrane extract) for culturing ES cells. I am also sell a lot of used equipment and we’re also distributors of just about any lab supply you’d need.

Oh, and our latest project is to now become the Biodiesel Testing Center for the State of Maryland! That was a weird twist that just fell into our lap. We have just installed 2 GC’s (gas chromatography system, on free loan from PerkinElmer if we help write their SOPs, standard operating procedure), free lab space from the State and have already started testing last week.

Kind of busy. Maybe some day there’ll be some money in it for me . I applied for Md Stem Cell Commission funding but was not funded. I have also submitted a grant through the NIH/SBIR programs, but no external funding has come trough. At some point in time, I will be trying to raise money through investors, if I am not able to make ends meet on my own and after establishing a few sustainable products.

ACs: Foreskin feeder layers are the replacements of the animal (mouse) feeder layers for hES cells but another big culture problem is the “black box” fetal bovine or calf serum used for human stem cells that eventually should be prepared to clinical trials. How much FBS are you using in your medium and how would you like to eliminate them?

JH: I don’t use FCS in my medium. Although I am using medium from other commercial sources which are known to contain FCS, I use cord blood serum and placental plasma in my own media, which I produce myself. I use a proprietary formulation that I have developed based on my years of work with primary cells.

ACs: What type of used equipment network do you have? This sounds like a terrific recycling idea and one that is perfect for capital-low rookie biotech entrepreneurs.

JH: We have a pretty extensive used equipment network, actually. I am working with a number of the “big guys” in the area (Lonza/Cambrex, Human Genome Sciences, Digene/Qiagen, Invitrogen, Medimmune) because I just happen to know a lot of people in those companies (thanks to Invitrogen eliminating for 2,000 jobs in Maryland in 2000) . They are constantly turning over equipment. I do all of this through BridgePath Scientific although we’re not advertising the used equipment through the web site, yet. We just brought a mechanic on board last week and he’s going to be posting it soon. Just bought 11 biosafety cabinets, 6-8 analytical balances and a bunch of other lab ware from a wholesale group, so we will be busy. Through BridgePath, we’re also able to pool our purchasing power and get pricing on lab supplies that normally are only available to big companies. We are also starting to sell and market products produced by other FITCI companies, so we have closed the supply chain loop.

Posted in General, News, Rants | No Comments »

Atlantic Biomass

Posted by Jim H on November 27, 2007

Another nice write up in the FNP today about Atlantic Biomass

I hope, in the future, I can stop lifting stories off the FNP and come up somethings on my own, just our own Biodiesel testing business is starting to take off and I have been busy playing in the lab.

On a different topic, I added a couple new Biotech blogs to the blogroll via The Regeneration Station. I found this one through PIMM.  I like it because it is industry focused with a bend towards regenerative medicine and stem cell stuff. I copied a few other links off his blogroll, a couple sites I hadn’t seen before. Please check it out.

Posted in Awards and recognition, Biochemistry, Business, Expansion, General, News, Public/Private Companies, Stem Cells | 2 Comments »

BioTechniques Techniques

Posted by Jim H on November 16, 2007

I have been meaning to add some links for Protocols, Methods and SOPS. One useful web resource I encountered is to the BioTechniques Molecular Biology Techniques forum. There is just a ton of information, protocols and the like. I haven’t had a chance to play around with it too much, but this looks like a good resource to book mark.

For example:

Welcome to the BioTechniques® Molecular Biology Forums, a science-based bulletin board for techniques, tips, and questions concerning molecular biology, cell biology, microscopy, and bioinformatics.

BioTechniques® Molecular Biology Techniques Forums
Reasons for or against putting a hist tag at both ends?

Post new topic Reply to topic BioTechniques® Molecular Biology Techniques Forums Index -> Protein

PostPosted: Nov 16 2007 7:37 am Post subject: Reasons for or against putting a hist tag at both ends? Reply with quote
I ordered a custom made NusA fusion vector from Addgene recently and originally thought that the vector had only a C-terminal histidine tag. Upon closer inspection I noticed that there is also a N-terminal histidige tag. The C-tag is naturally optional so that by including a stop codon in your insert you can choose not to have it. My question is that is there especially something for or against using both tags? We can assume that the tag sequence does not affect the specifity of my assay and doesn’t need to be removed. The tag(s) are there for purification.

Question 2: Do you know if there is an actual difference in leakage between using TAA versus TGA as the stop codon in bacterial expression?
PostPosted: Nov 16 2007 10:42 am Post subject: Reply with quote
There is no reason to use both tags. I think the vector is designed that way, so someone can have a choice of putting the tag at the N-terminus or the C-terminus, depending on the protein being expressed. There may be restriction enzyme site upstream of the N-terminus His-tag to let you delete the tag sequence, if you so chose.

It is better to avoid TGA stop codon when you express protein in E. coli to avoid read through. Here is an example.

http://www.biochemj.org/bj/309/0411/3090411.pdf

Just like human, they go through STOP sign. Laughing

Posted in Biochemistry, General, General Biology, Molecular Biology | No Comments »